Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015918220.1_cds_XP_016467719.1_60436
CDS Infomation

[gene=LOC107790313] [db_xref=GeneID:107790313] [protein=probable rhamnogalacturonate lyase B isoform X2] [protein_id=XP_016467719.1] [location=join(47673..47785,48034..48175,48529..48699,48873..49028,50343..50449,50573..50663,52030..52171,52259..52415,52493..52609,52746..52872,52949..53191)] [gbkey=CDS]
Sequence

ATGCTTAAAGGTTCTTCAGGTTTCTATTCTTATGCAATTTATGAACATTTAGAGGGATGG
CCTGGTTTCAACCTTGATGAGACTAGGATTGCATTCAAGCTCAGAAAAGACAAGTTTCAT
TACATGGCAATGGCAGATAACAGGCAGAGATACATGCCCTTACCTGATGACAGGTTACCA
GATAGAGGACAACCACTTGCTTATCCTGAAGCAGTCCTGCTTGTCAATCCCGTGGAGCCT
GAGTTCAAAGGCGAGGTGGATGACAAGTATCAGTACTCATGTGAGGATAAAGATCTCAAG
GTCCATGGCTGGATTTGTATGGATCCACCACTAGGGTTCTGGATTATCATTCCCAGTGAC
GAATTTCGATCCGGGGGACCCCTTAAACAAAACCTCACTTCTCATGTTGGTCCAACTGCT
CTTTCTATGTTTCTCAGTGCCCACTATGCAGGAGAGGATTTGGTTGCAAAGTTTGGAGAA
GGAGAGCCATGGAAAAAAGTCTTTGGACCAGTTTTTATATATCTTAATTATGTCAATGAA
GGGGAGGATCCCCTTATTCTCTGGGAGGATGCCAAAGAACAGATGCTGGTAGAAGTTCAA
AGCTGGCCTTACAGTTTTCCAGCATCTGAGGATTTTCCATCATCATCGCAACGCGGTAAT
ATTAGTGGAAGATTGTTAGTCCAAGACAGGTACTTCAAAGATGATAAGATATCTGCTTCT
GGTGCATATGTTGGCTTAGCTCCACCAGGGGAAGTCGGTTCTTGGCAAAGAGAATGCAAG
GACTATCAATTCTGGATAAAAGCAGATGAGGAAGGCTATTATATAATCAGTGATATACGA
GCAGGCAACTATAACTTGTATGCATTTGTCCCTGGATTTATTGGAGATTACAAAAGTGAT
ATTACAGTTACAATTACCTCGGGTTGCAGCATTGAGATAGATGATCTTGTCTTTGAACCC
CCAAGAAATGGACCTACACTTTGGGAAATTGGCATTCCTGATCGTTCTGCTCGAGAGTTT
TATATTCCTGATCCTGATCCAAAATATATCAACAAACTCTTTGTTAATCATCCTGATAAG
TTTAGACAGTACGGGCTATGGGAGAGATACAGTGACTTGTATCCAAACGGTGATATAGTT
TTTACTGTTGGAGAGAGTGACTACAAAAAAGATTGGTTCTTTGCTCAAGTCACTAGGAAA
AGGGATGAGAAGACATATATAGGAACAACATGGCAAATAAAGTTCAAACTTGACAGTGTT
AAACAAAAGGAAATCTATACACTAAGAGTGGCACTTGCATCTGCAGCTCAAGCTGAATTA
CAGGTTCGCCTTAATGATTCAAGCACGAATACTCCTCTATTCTCAAGTGGAGTGATAGGG
AAGGATAACGCGATAGCAAGGCATGGAATTCATGGTCTCCATTGGCTGTTCAATGTGAAT
TTGCAGGGTAATATACTTGTTGAAGGGGAAAATACCATATATTTGACCCAAGCAAATGCA
ACTAGTCCTTTTCAAGGGATCATGTATGATTATATCCGTTTAGAAGGACCTCCTTCCCAT
GACTAA

Peptide Sequence

PEP ID

XP_016467719.1
PEP Infomation

PREDICTED: probable rhamnogalacturonate lyase B isoform X2 [Nicotiana tabacum]
Sequence

MLKGSSGFYSYAIYEHLEGWPGFNLDETRIAFKLRKDKFHYMAMADNRQRYMPLPDDRLP
DRGQPLAYPEAVLLVNPVEPEFKGEVDDKYQYSCEDKDLKVHGWICMDPPLGFWIIIPSD
EFRSGGPLKQNLTSHVGPTALSMFLSAHYAGEDLVAKFGEGEPWKKVFGPVFIYLNYVNE
GEDPLILWEDAKEQMLVEVQSWPYSFPASEDFPSSSQRGNISGRLLVQDRYFKDDKISAS
GAYVGLAPPGEVGSWQRECKDYQFWIKADEEGYYIISDIRAGNYNLYAFVPGFIGDYKSD
ITVTITSGCSIEIDDLVFEPPRNGPTLWEIGIPDRSAREFYIPDPDPKYINKLFVNHPDK
FRQYGLWERYSDLYPNGDIVFTVGESDYKKDWFFAQVTRKRDEKTYIGTTWQIKFKLDSV
KQKEIYTLRVALASAAQAELQVRLNDSSTNTPLFSSGVIGKDNAIARHGIHGLHWLFNVN
LQGNILVEGENTIYLTQANATSPFQGIMYDYIRLEGPPSHD

Transcript Sequence

Gene sequence data has not been registered.